PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00889.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 374aa    MW: 41868.6 Da    PI: 6.0836
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00889.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.34.8e-151462148
                             TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                             +g+W++eEd +l+d+++  G+g +W + ++++g++R++k+c++rw++yl
  Rsa1.0_00889.1_g00001.1 14 KGPWSPEEDAKLKDYIESSGTGgNWIALPQKIGLRRCGKSCRLRWLNYL 62
                             79*********************************************97 PP

2Myb_DNA-binding38.52.7e-1269111246
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              g +++eEd ++ ++    G++ W+ Ia+ ++ gRt++++k++w++
  Rsa1.0_00889.1_g00001.1  69 GGFSEEEDNIICNLYVTIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                              569******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.88962IPR017930Myb domain
SuperFamilySSF466891.02E-2511109IPR009057Homeodomain-like
SMARTSM007173.8E-111364IPR001005SANT/Myb domain
PfamPF002496.7E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-231569IPR009057Homeodomain-like
CDDcd001678.72E-81662No hitNo description
PROSITE profilePS5129421.38563117IPR017930Myb domain
SMARTSM007172.2E-1167115IPR001005SANT/Myb domain
PfamPF002496.6E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2370117IPR009057Homeodomain-like
CDDcd001676.64E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKDYIE SSGTGGNWIA LPQKIGLRRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC NLYVTIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLNK  120
QRKEFQEARM QQEMVMMKRQ QQGQGQFQIN GSTDLYLNNM FGSSAWPLLP QLPPPHSQVP  180
LVMMEPTSCN YYQTTPSCTL EQKPLITLKN MVKIEEEPER TNPDHHHHED SMTNSFDLSF  240
SQLLLDPNYY LESGGGGEGE FALMSSSTNS PLPNTSGDNH HHQHQQDILQ WFGGSSFQTE  300
AINDVFLNNN NNIANLETHE NPKLYGNSSV AGAGAALAGG TTSTSADQST ISWEDITSLV  360
NSDDASYFNG PNHV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-24141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2274720.0AK227472.1 Arabidopsis thaliana mRNA for transcription factor like protein, complete cds, clone: RAFL14-10-M08.
GenBankAY5196470.0AY519647.1 Arabidopsis thaliana MYB transcription factor (At5g65790) mRNA, complete cds.
GenBankBT0059940.0BT005994.1 Arabidopsis thaliana At5g65790 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626384.10.0PREDICTED: transcription factor RAX3
SwissprotQ9M2Y91e-128RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A0D3BEM90.0A0A0D3BEM9_BRAOL; Uncharacterized protein
STRINGBra024419.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29412568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.11e-175myb domain protein 68